Add graph references
This commit is contained in:
+162
@@ -0,0 +1,162 @@
|
||||
.. image:: https://github.com/mapequation/infomap/actions/workflows/build.yml/badge.svg
|
||||
|
||||
Infomap
|
||||
=======
|
||||
|
||||
Infomap is a network clustering algorithm based on the `Map equation`_.
|
||||
|
||||
For detailed documentation, see `mapequation.org/infomap`_.
|
||||
|
||||
For a list of recent changes, see `CHANGELOG.md`_ in the source directory.
|
||||
|
||||
.. _Map equation: https://www.mapequation.org/publications.html#Rosvall-Axelsson-Bergstrom-2009-Map-equation
|
||||
.. _`mapequation.org/infomap`: https://www.mapequation.org/infomap
|
||||
.. _`CHANGELOG.md`: https://github.com/mapequation/infomap/blob/master/CHANGELOG.md
|
||||
|
||||
Getting started
|
||||
---------------
|
||||
|
||||
Infomap can be installed either from `PyPI`_ using ``pip`` or by
|
||||
compiling from source.
|
||||
|
||||
An experimental Javascript version for browsers is available on `NPM`_.
|
||||
|
||||
.. _PyPI: https://pypi.org/project/infomap/
|
||||
|
||||
Using pip
|
||||
---------
|
||||
|
||||
A pre-compiled version is available for macOS users.
|
||||
|
||||
Installing on other operating systems requires a
|
||||
working ``gcc`` or ``clang`` compiler.
|
||||
|
||||
To install, run::
|
||||
|
||||
pip install infomap
|
||||
|
||||
|
||||
To upgrade, run::
|
||||
|
||||
pip install --upgrade infomap
|
||||
|
||||
|
||||
When the Python package is installed, an executable called
|
||||
``infomap`` (with lowercase i) is available from any directory.
|
||||
|
||||
To get started, read `Infomap Python API`_.
|
||||
|
||||
.. _`Infomap Python API`: https://mapequation.github.io/infomap/python/
|
||||
|
||||
Using Docker
|
||||
------------
|
||||
|
||||
There are currently two Docker images available on `Docker Hub`_.
|
||||
|
||||
- ``mapequation/infomap``
|
||||
- ``mapequation/infomap:notebook`` based on ``jupyter/scipy-notebook``
|
||||
|
||||
The image ``mapequation/infomap`` can be started with
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
docker run -it --rm \
|
||||
-v `pwd`:/data \
|
||||
mapequation/infomap
|
||||
[infomap arguments]
|
||||
|
||||
You can also use the supplied `docker-compose.yml`_:
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
docker-compose run --rm infomap
|
||||
|
||||
The image ``mapequation/infomap:notebook`` can be started with
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
docker run \
|
||||
-v `pwd`:/home/jovyan/work \
|
||||
-p 8888:8888 \
|
||||
mapequation/infomap:notebook \
|
||||
start.sh jupyter lab
|
||||
|
||||
Or similarly, using docker-compose:
|
||||
|
||||
.. code-block:: bash
|
||||
|
||||
docker-compose up notebook
|
||||
|
||||
.. _`Docker Hub`: https://hub.docker.com/r/mapequation/infomap
|
||||
.. _`docker-compose.yml`: https://github.com/mapequation/infomap/blob/master/docker-compose.yml
|
||||
|
||||
Compiling from source
|
||||
---------------------
|
||||
|
||||
Installing Infomap from source requires a working ``gcc`` or ``clang`` compiler.
|
||||
|
||||
To download and compile the newest version from `Github`_, clone the repository
|
||||
by running
|
||||
|
||||
.. code-block:: shell
|
||||
|
||||
git clone git@github.com:mapequation/infomap.git
|
||||
cd infomap
|
||||
make
|
||||
|
||||
This creates the binary ``Infomap``, run it using::
|
||||
|
||||
./Infomap [options] network_data destination
|
||||
|
||||
For a list of options, run::
|
||||
|
||||
./Infomap --help
|
||||
|
||||
Read `the documentation`_ to learn more about the different options.
|
||||
|
||||
.. _Github: https://www.github.com/mapequation/infomap
|
||||
.. _the documentation: https://www.mapequation.org/infomap
|
||||
|
||||
Npm package
|
||||
-----------
|
||||
|
||||
An experimental Javascript web worker is available on `NPM`_.
|
||||
|
||||
To install it, run
|
||||
|
||||
.. code-block:: shell
|
||||
|
||||
npm install @mapequation/infomap
|
||||
|
||||
.. _NPM: https://www.npmjs.com/package/@mapequation/infomap
|
||||
|
||||
Feedback
|
||||
--------
|
||||
|
||||
If you have any questions, suggestions or issues regarding the software,
|
||||
please add them to `GitHub issues`_.
|
||||
|
||||
.. _Github issues: http://www.github.com/mapequation/infomap/issues
|
||||
|
||||
Authors
|
||||
-------
|
||||
|
||||
Daniel Edler, Anton Holmgren, Martin Rosvall
|
||||
|
||||
For contact information, see `mapequation.org/about.html`_.
|
||||
|
||||
.. _`mapequation.org/about.html`: https://www.mapequation.org/about.html
|
||||
|
||||
Terms of use
|
||||
------------
|
||||
|
||||
Infomap is released under a dual licence.
|
||||
|
||||
To give everyone maximum freedom to make use of Infomap
|
||||
and derivative works, we make the code open source under
|
||||
the GNU General Public License version 3 or any
|
||||
later version (see `LICENSE_GPLv3.txt`_).
|
||||
|
||||
For a non-copyleft license, please contact us.
|
||||
|
||||
.. _LICENSE_GPLv3.txt: https://github.com/mapequation/infomap/blob/master/LICENSE_GPLv3.txt
|
||||
Reference in New Issue
Block a user