Files
Abdelrahman Said a11edf0c53 Add graph references
2026-06-28 13:49:01 +01:00

568 lines
18 KiB
Python
Executable File

#! /usr/bin/env python3
# igraph library
# Copyright (C) 2005-2021 The igraph development team
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA
# 02110-1301 USA
#
###################################################################
"""DocBook XML generator for igraph.
The generator parses one or more input files for documentation chunks
(embedded in the source code as Doxygen-style comments), and processes
them with a set of regex-based rules. The processed chunks are then
substituted into a template file containing <!-- doxrox-include -->
directives.
When a template file is not provided, the generator will read the input
files, process them with the ruleset and save a dictionary mapping chunk
names to the corresponding processed chunks into a Python pickle. This
can be used to speed up the processing of multiple input files as you can
generate the chunks once and then re-use them for multiple input files.
"""
import os
import re
import sys
from argparse import ArgumentParser
from collections import defaultdict
from contextlib import contextmanager
from dataclasses import dataclass
from enum import Enum
from fnmatch import fnmatch
from hashlib import sha1
from operator import itemgetter
from pathlib import Path
from pickle import dump, load
from time import time
from typing import Any, Callable, Dict, Iterator, List, Optional, Pattern
#: Constant indicating the start of a comment that doxrox.py will process
DOXHEAD: str = r"/\*\*"
#: Stores whether we want verbose output
verbose: bool = False
def fatal(message: str, code: int = 1):
"""Prints an error message and exits the program with the given error code."""
print(message, file=sys.stderr)
sys.exit(code)
#########################################################################
# The main function
#########################################################################
def main():
"""Main entry point of the script."""
global verbose
# get command line arguments
parser = create_argument_parser()
arguments = parser.parse_args()
outputfile: str = arguments.output_file
inputs: List[str] = arguments.inputs
verbose = arguments.verbose
if (
arguments.template_file in inputs
or arguments.rules_file in inputs
or outputfile in inputs
):
fatal("Special file is also used as an input file", 2)
# open the cache file if needed
cache = ChunkCache(arguments.cache_file) if arguments.cache_file else None
# get all regular expressions
rules: List[Rule]
if arguments.rules_file:
with operation("Reading regular expressions...") as op:
rules = read_regex_rules_file(arguments.rules_file)
op("{0} rules read".format(len(rules)))
else:
rules = []
# parse all input files and extract chunks, apply rules
if arguments.chunk_file:
with operation("Reading pickled chunks...") as op:
try:
with open(arguments.chunk_file, "rb") as f:
all_chunks = load(f)
except IOError:
fatal("Error reading chunk file: " + arguments.chunk_file, 9)
op("{0} chunks read".format(len(all_chunks)))
else:
all_chunks = {}
rule_timings = defaultdict(list)
for ifile in inputs:
with operation("Parsing input file {0}...".format(ifile)) as op:
try:
with open(ifile, "r") as f:
contents = f.read()
except IOError:
fatal("Error reading input file: " + ifile, 3)
if cache:
key = cache.key_of(contents)
chunks = cache.get(key)
else:
key, chunks = None, None
if chunks is not None:
op("{0} chunks read from cache".format(len(chunks)))
else:
chunks = collect_chunks_from_input_file(
ifile, contents, rules, rule_timings
)
op("{0} chunks parsed".format(len(chunks)))
if key and cache:
cache.put(key, chunks)
for name, chunk in chunks.items():
if name in all_chunks:
fatal(
"Multiple files provide chunks for {0!r}".format(name), code=4
)
all_chunks[name] = chunk
if arguments.timing_stats and rule_timings:
rule_timings = {name: sum(dts) / len(dts) for name, dts in rule_timings.items()}
for name, dt in sorted(rule_timings.items(), key=itemgetter(1), reverse=True):
print("{0}: {1:.3f}us".format(name, dt))
print("======")
if cache:
cache.close()
if arguments.template_file:
# substitute the template file
with operation("Reading template file..."):
try:
with open(arguments.template_file, "r") as tfile:
tstring = tfile.read()
except IOError:
fatal("Error reading the template file: " + arguments.template_file, 7)
with operation("Substituting template file..."):
chunk_iterator = re.finditer(
r"<!--\s*doxrox-include\s+(\w+)\s*-->", tstring
)
outstring = []
last = 0
for match in chunk_iterator:
try:
chunk = all_chunks[match.group(1)]
except KeyError:
fatal("Chunk not found: {0}".format(match.group(1)), code=4)
outstring.append(tstring[last : match.start()])
outstring.append(chunk)
last = match.end()
outstring.append(tstring[last:])
outstring = "".join(outstring)
# write output file
with operation("Writing output file..."):
try:
with open(outputfile, "w") as ofile:
ofile.write(outstring)
except IOError:
fatal("Error writing output file:" + outputfile, 8)
else:
# no template file given so just save the chunks as a pickle into the
# output file
with operation("Writing output file..."):
try:
with open(outputfile, "wb") as ofile:
dump(all_chunks, ofile)
except IOError:
fatal("Error writing output file:" + outputfile, 5)
#########################################################################
# Argument parser
#########################################################################
def create_argument_parser() -> ArgumentParser:
"""Creates the command line argument parser that the script uses."""
parser = ArgumentParser(description=(sys.modules[__name__].__doc__ or "").strip())
parser.add_argument(
"--cache",
metavar="FILE",
dest="cache_file",
help="optional cache file to store chunks from already processed files",
)
parser.add_argument(
"-t",
"--template",
metavar="FILE",
dest="template_file",
help="template file to process",
)
parser.add_argument(
"-e",
"--rules",
metavar="FILE",
dest="rules_file",
help="file containing matching and replacement rules",
)
parser.add_argument(
"-o",
"--output",
metavar="FILE",
dest="output_file",
required=True,
help="name of the output file",
)
parser.add_argument(
"-v",
"--verbose",
action="store_true",
default=False,
dest="verbose",
help="enable verbose output",
)
parser.add_argument(
"--chunks",
dest="chunk_file",
metavar="FILE",
help="name of a previously saved chunk file",
)
parser.add_argument(
"--timing-stats",
dest="timing_stats",
action="store_true",
default=False,
help="print the average time it takes to process regex rules from the rules file",
)
parser.add_argument(
"inputs", metavar="INPUT", nargs="*", help="input files to process"
)
return parser
#################
# classes and functions to read the regular expression rules
#################
class RuleType(Enum):
REPLACE = "replace"
RUN = "run"
@dataclass
class Rule:
regex: Pattern[str]
"""The regular expression that the rule will attempt to match."""
replacement: str
"""The replacement string for the match, or the code to execute on the
match.
"""
type: RuleType
"""Type of the rule"""
name: Optional[str]
"""Name of the rule, for debugging purposes."""
glob: Optional[str] = None
"""Optional glob pattern that specifies which input files the rule
applies to.
"""
def applies_to_filename(self, filename: str) -> bool:
"""Returns whether the rule applies to files with the given name."""
if self.glob:
return fnmatch(filename, self.glob)
else:
return True
def read_regex_rules_file(filename) -> List[Rule]:
"""Parses the file containing the regex-based rules that we use to chop
up the input source files into chunks that can later be fed into a
DocBook document.
Parameters:
filename: name of the input file
Returns:
the rules that were parsed from the input file
"""
rules: List[Rule] = []
def parse_error(lineno):
"""Helper function to indicate a parse error at the given line."""
fatal(
"Parse error in regex file ({0}), line {1}".format(filename, lineno), code=4
)
def store(
rule: List[str],
replacement: List[str],
rule_name: Optional[str],
rule_type: RuleType,
glob: Optional[str],
) -> None:
"""Helper function to append the current rule to the result."""
regex = re.compile("".join(rule), re.VERBOSE | re.MULTILINE | re.DOTALL)
replacement_str = "".join(replacement)[:-1]
rules.append(Rule(regex, replacement_str, rule_type, rule_name, glob))
mode = "empty"
regex, replacement = [], []
rule_name: Optional[str] = None
rule_type: Optional[RuleType] = None
glob: Optional[str] = None
try:
with open(filename, "r") as f:
for lineno, line in enumerate(f, 1):
if line.startswith("REPLACE"):
# a new pattern block starts
if mode not in ("empty", "with"):
parse_error(lineno)
else:
if regex and rule_type:
store(regex, replacement, rule_name, rule_type, glob)
regex.clear()
replacement.clear()
mode = "replace"
match = re.match(
r"^REPLACE( IN (?P<glob>[^\s]+))?\s+-+\s+(?P<name>.*)\s+-",
line,
)
rule_name = match.group("name") if match else None
glob = match.group("glob") if match else None
elif line.startswith("WITH") or line.startswith("RUN"):
# the second half of the pattern block starts
if mode != "replace":
parse_error(lineno)
else:
mode = "with"
rule_type = (
RuleType.REPLACE if line.startswith("WITH") else RuleType.RUN
)
elif re.match(r"^\s*$", line):
# empty line, do nothing
pass
else:
# normal line, append
if mode == "replace":
regex.append(line)
elif mode == "with":
replacement.append(line)
else:
parse_error(lineno)
if regex != "" and rule_type:
store(regex, replacement, rule_name, rule_type, glob)
except IOError:
fatal("Error reading regex file: " + filename, code=4)
return rules
#################
# parse an input file string
#################
def collect_chunks_from_input_file(
path: str, strinput: str, rules: List[Rule], rule_timings
) -> Dict[str, str]:
result: Dict[str, str] = {}
# split the file
chunks = re.split(DOXHEAD, strinput)
chunks = chunks[1:]
# get the filename part of the path
filename = os.path.basename(path)
# apply all rules to the chunks
for chunk in chunks:
name: Optional[str] = None
for rule in rules:
start = time()
if not name and "name" in rule.regex.groupindex:
# The regex might provide us with a chunk name so try figuring
# out what the "name" group might match to
matched = rule.regex.search(chunk)
if matched:
try:
name = matched.group("name")
except IndexError:
name = ""
if rule.applies_to_filename(filename):
if rule.type is RuleType.REPLACE:
# This is a simple regex replacement rule
try:
chunk = rule.regex.sub(rule.replacement, chunk)
except IndexError:
print("Index error:" + chunk[0:60] + "...")
print("Pattern:\n" + rule.regex.pattern)
print("Current state:" + chunk[0:60] + "...")
fatal("Parsing error", code=6)
elif rule.type is RuleType.RUN:
# This is a piece of Python code that has to be executed on
# the part that matched
matched = rule.regex.search(chunk)
if matched:
exec(rule.replacement)
else:
fatal("Invalid rule type: {0!r}".format(rule.type), code=6)
rule_timings[rule.name].append((time() - start) * 1000000)
if not name:
# print("Chunk without a name ignored:" + ch[0:60] + "...")
continue
result[name] = chunk.strip()
return result
@contextmanager
def operation(message: str) -> Iterator[Callable[[Any], None]]:
"""Helper function to show progress messages for a potentially long-running
operation in verbose mode.
Parameters:
message (str): the message to show
"""
global verbose
if verbose:
print(message, end="")
result = [None]
def set_result(obj: Any) -> None:
result[0] = obj
success = False
try:
yield set_result
success = True
finally:
if verbose and success:
if result[0] is None:
print(" done.")
else:
print(" done, {0}.".format(result[0]))
class ChunkCache:
"""Simple on-disk cache that stores SHA256 hashes of files along with the
DocBook documentation chunks that were parsed from them.
"""
_data: Optional[Dict[str, Dict[str, str]]]
_dirty: bool
_path: Path
def __init__(self, filename: str, hash=sha1):
"""Constructor.
Parameters:
filename: name of the file on the disk where the cache resides
hash: the hash function to use
"""
self._data = None
self._dirty = False
self._hash = hash
self._path = Path(filename)
def _load(self) -> None:
"""Populates the in-memory copy of the cache from the disk."""
if self._path.exists():
try:
with self._path.open("rb") as fp:
self._data = load(fp)
except (IOError, EOFError):
# cache corrupted
self._data = {}
else:
self._data = {}
self._dirty = False
def close(self) -> None:
"""Closes the cache and flushes its contents back to the disk if it
changed recently.
"""
if self._dirty:
self.flush()
def flush(self) -> None:
"""Flushes the contents of the cache back to the disk."""
with self._path.open("wb") as fp:
dump(self._data, fp)
self._dirty = False
def get(self, key: str) -> Optional[Dict[str, str]]:
"""Returns the chunks associated to the file with the given key, or
`None` if the key is not in the cache.
"""
if self._data is None:
self._load()
assert self._data is not None
return self._data.get(key)
def key_of(self, contents, encoding: str = "utf-8") -> str:
"""Returns the hash key corresponding to the file with the given
contents.
"""
if not isinstance(contents, bytes):
contents = contents.encode(encoding)
key = self._hash()
key.update(contents)
return key.hexdigest()
def put(self, key: str, chunks: Dict[str, str]) -> None:
"""Stores some chunks associated to the file with the given key."""
assert self._data is not None
self._data[key] = chunks
self._dirty = True
if __name__ == "__main__":
main()